GgaEX0016869 @ galGal3
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23609111-23613579:-
Coord C1 exon
chr7:23613526-23613579
Coord A exon
chr7:23612661-23612817
Coord C2 exon
chr7:23609111-23609364
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATCTGGCGATTTCTGTGCAGGGC
3' ss Score
6.64
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATGGCAGCTGGCGAGTCCCCTCCCGTAGGAGATGCCTTCATCGACCTGCAGCAG
Seq A exon
GGCAGAGATCGTGCAGAAAAAGCCTCTCCTGGTGCCGAGGACGATGAGGACTTGGATAAGACTTTATCAATCGAGAGATTTGGGGACCTGATAAGCAAGTCAGCATCAAGCAATCTGGAGAAGCAGAGACGCTGCTACAGTGAGAGAGATTTTGAAT
Seq C2 exon
TCCACCGCCAAACCTCGCACCACATCCATCATCCCCTTTCCACTCACCTCCCTTCTGCCCTCAAGTTCCAAAAGAGGCCCCCCCGTGCCGGCAGGAGGAAAAAAAGAAGAAGGAAAAAGAAGAAAACCTCAGTACCCCCCTCAGAGGTCACCCCTACCATCCAAGAAGTGGACGAGGAAGGAGGAGAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGGAGAGTCTGAGACAGAGGAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF039858=Paf1=PU(3.4=7.5)
C2:
PF039858=Paf1=FE(72.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCGACCTGCAGCAG
R:
TCAGACTCTCCTTCTTCCTCCT
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]