DreEX0008099 @ danRer10
Exon Skipping
Gene
ENSDARG00000104005 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr9:46725138-46803619:+
Coord C1 exon
chr9:46725138-46725290
Coord A exon
chr9:46797506-46797662
Coord C2 exon
chr9:46803372-46803619
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCAATTGATCTCGTTTGCAGGTT
3' ss Score
9.26
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTTATGCCACCCCACAGGCTGACTGGAAACCCAGCCGTGAAAGAGAAGGGCTGATTACAGACCCCTAGTGTACCCGCAGCTGCGCCCGTCCCTGTCCCCATGGCGACAGGAGGTCATGCCCCCGAGACAGATGTGTTGATCAACCTGCATCAG
Seq A exon
GTTTTGACAGAGGAAGAGAAGGACTCCACAGCAGGACAGGAAGATGAGGAATGGGAGAAGGCCTTGTCTGTGGAGAGGTTCGGGGACATCATTACTGAGTCTGCCGTCAATGGCGCAGACAAAATGGGCCGCAGTTACAATGAGAAAGATTTTGAGT
Seq C2 exon
ATCACCGGCACACCTTCCACCATACCCACCACCCCCTGTCCACACATCTTCCACCGCAGCGTTTCCGAAAAAGGGTGCTCAGTATGGACCGCCGGCGGAAGAGAAAGAGGAAGAAAAAGAAGACGTCTATGCCTCCGTCAGATGTCACACCCACTATTCATGAAGTGGATGAGGAGGAGGCGGAGTCTGAAATCGAGGGGCAGTGTCAAGCAGCCACACCTACTGAGCCATCTGAAGAGCTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104005-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.925 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCCAGCCGTGAAAGAG
R:
CTTCCTCTTTCTCTTCCGCCG
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]