RnoEX0082819 @ rn6
Exon Skipping
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82742972-82744393:+
Coord C1 exon
chr9:82742972-82743114
Coord A exon
chr9:82743401-82743566
Coord C2 exon
chr9:82744116-82744393
Length
166 bp
Sequences
Splice sites
3' ss Seq
AGAGGTTATCTGGTCTGCAGGTC
3' ss Score
5.12
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
GCTCCCCAAGAGGTCTCCGCAGCGCCCCCTTCTTCTCACCCAGGATTTGGGTCCCGTAGTGACTGAGAGACTCCTAAGTCTTCAGCCCAACCATGGCTAATGGGGTGATCCCACCGCCCGGGGGCGCCTCCCCCCTACCCCAG
Seq A exon
GTCCGGGTGCCCTTGGAGGAGCCCCCACTGGGTCCAGATGTAGAAGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGACCCCGGCCTGGGACCCTGAGAAGCCTAGCCGCAGCTACAGCGAGCGCGACTTTGAGT
Seq C2 exon
TTCACCGGCACACATCCCACCACACCCATCACCCGCTCTCAGCCCGCCTGCCTCCACCCCACAAGCTACGGCGACTGCCCCCCACCTCTGCTCGGCACGCCAGGAGGAAGAGGAAGAAAGAGAAAACCTCTGCTCCCCCCTCAGAAGGGACACCCCCTATCCAGGAGGAGGGGGGAGCTGGAGCAGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGGAGAGTCTGAGGCAGAGCCTGTGGAGCCTCCACCCCCAGGGCCACCACAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138-'4-6,'4-3,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCCAACCATGGCTAATG
R:
CTCCTCTTCTGCTCCAGCTCC
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]