BtaEX6014351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14226385-14231375:-
Coord C1 exon
chr3:14230728-14231375
Coord A exon
chr3:14227217-14227324
Coord C2 exon
chr3:14226385-14226543
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTCACTTCTCTCCCCTCAGGTG
3' ss Score
11.85
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCCCAGTGAGCTCAGCAGCCTGGACCCAGAGGCCCCTCTCCCCACTGAGCCCGTTCCAGAGGAGTCACTCACCCAGGCATCGCCTCCAGTGAGGGCTGCCCTCCAGCCTGGTGTATCACCACCACCCTATGATGAGCCAGAGGCTCCCAGGCCTCCAAGGGTCCTTGGACCACCCACCAAGACCCTGCCCACTCCTAGGGAGGGGAACCTGGCATCCCCCCCACCTTCCACTCTGGTTGGGGCAAGAGAGATAGAGGAGGAGACTGGGGGTCCTGAGCTCTCTGGGGCCCCTCGAGGAGAGAGTGAGGAGACAGGAAGCTCCGAGGATGCCCCTTCCCTGCTTCCAGCCACACGGGCCCCTGGGGATACCAGGGATCTGGAGACCCCCTCTGAAGAGAATTCCAGAAGAACTGTCCCAGCAGGGACTTCAGTGCGTGCCCAGCCAGTGCTGCCCACTGACAGTGCCAGCCGTGGTGGAGTGGCCGTGGCCCCCTCATCAG
Seq A exon
GTGACTGTGTCCCCAGCCCCTGCCACAATGGCGGGACATGCTTGGAGGAGGAGGAGGGGGTCCGCTGCCTGTGTTTGCCTGGCTATGGGGGGGACCTGTGCGATGTTG
Seq C2 exon
GCCTCCACTTCTGCAGCCCCGGTTGGGACGCCTTCCAGGGTGCCTGCTACAAGCACTTTTCTGCCCGAAGGAGCTGGGAGGAGGCGGAGAACAAGTGCCGGATGTACGGCGCGCACCTGGCCAGCATCAGCACGCCGGAGGAACAGGACTTCATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGAACTGTCCCAGCA
R:
GATGAAGTCCTGTTCCTCCGG
Band lengths:
255-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]