RnoEX0014311 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187362212-187365837:-
Coord C1 exon
chr2:187365250-187365837
Coord A exon
chr2:187362750-187362857
Coord C2 exon
chr2:187362212-187362370
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTCTCCTCTGTTAGGTG
3' ss Score
9.66
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGAGACTCCGAAGGAAGAGAAGGAGCAGGAGAACCTGTGGGTGTGGCCCACGGAGCTCAGCAGCCCTCTCCCTACTGGCTTGGAAACAGAGCACTCACTCTCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCATCACCTTCTCCCAGGCCTCCAAGGGTCCATGGACCGCCTGCAGAGACTTTGCAACCCCCAAGGGAGGGAAGCCTCACATCTACTCCAGATGGGGCAAGAGAAGTAGCGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAAAGCGAGGAGGCAGGAAGCTCCAGCTTGGAGGATGGCCCTTCCCTCCTTCCAGCGACATGGGCCCCTGTGGGTACCAGGGAGCTGGAGACCCCCTCAGAAGAGAAGTCTGGAAGAACTGTTCTGACAGGCACATCAGTGCAGGCCCAGCCAGTGCTGCCCACCGACAGTGCCAGCCGAGGTGGAGTGGCTGTGGCTCCCTCATCAG
Seq A exon
GTGACTGTATCCCCAGCCCCTGCCACAATGGTGGGACATGCTTGGAGGAGAAGGAGGGTTTCCGCTGCCTCTGTTTGCCAGGCTATGGGGGGGACCTGTGCGATGTTG
Seq C2 exon
GCCTCCACTTCTGCAGCCCGGGCTGGGAGGCCTTCCAGGGTGCCTGCTACAAGCACTTTTCCACACGAAGGAGTTGGGAGGAGGCAGAAAGCCAGTGCCGAGCGCTAGGGGCTCATCTGACCAGCATCTGCACCCCTGAGGAGCAGGACTTTGTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'18-33,'18-32,20-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCCCCTCAGAAGAG
R:
CAGATGCTGGTCAGATGAGCC
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]