DreEX6041372 @ danRer10
Exon Skipping
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29380972-29386899:-
Coord C1 exon
chr16:29386000-29386899
Coord A exon
chr16:29382880-29382987
Coord C2 exon
chr16:29380972-29381130
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACCACATGAATGTTTTTTAGACG
3' ss Score
5.83
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAACCCTTACTCGAACACAGCCACCATCACTCCTTCTAATCTAACAGATCTGCAAGAGCACAACGAAACCAATAGCGATGATGAAGATAATCAGGCCATCACTGTGGAACCCACAACGGATCTGGAGGTTACTTTTCTTCCTCATGGGACTCAGACCTCCATCTGGCAGAGCGTGGTGACAAGCCCTGGAGAGTTGAACGCAGATGTTGAGTTCAGTGGAGAAGCAGCACTGACCACAGATGACATGAGAGCATTAGAGGAATCTGAATCCACCAATGCACCTATCAGTGAGCAGACTGAGGAAACTCTAAAACCATCCAGCACGACAGACCATAATGATGCTGACGATGATGATAATGATAATGATGATGATGAACTCATAACTAAAGCAATAACAGGCAATGAAGAAGATGAGAATGATGTCAAAACCACACACGAGTCCTTCATTATACCTGTCAGACCTACACAGAGAGTGTTGATCAGGACAAGCTACATTTCAG
Seq A exon
ACGCATGTTTGGAAAACCCTTGCAAAAATGGAGGCACCTGTGTGGACAGTGGAGGAGATCAAAGGTGTCTCTGTTTGCCTACCTATGGAGGAGACTTCTGCGAGACAG
Seq C2 exon
ATCTAGAGCATTGTGAACCAGGCTGGGAGAAGTTCCAGGGGTTTTGCTACAAGCATTTCGCCAAGCGTCAGAAATGGGAAGTGGCAGAGCAGCACTGTCGCATGTGCGGAGGTCACCTGGTTTCTGTTATGTCACCTGAGGAACAGTTGTTCATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCCAGCACGACAGAC
R:
GCTTGGCGAAATGCTTGTAGC
Band lengths:
256-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]