MmuEX0007784 @ mm10
Exon Skipping
Gene
ENSMUSG00000004892 | Bcan
Description
brevican [Source:MGI Symbol;Acc:MGI:1096385]
Coordinates
chr3:87990140-87993642:-
Coord C1 exon
chr3:87993055-87993642
Coord A exon
chr3:87990675-87990782
Coord C2 exon
chr3:87990140-87990298
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCGCTTCTCTCCCCTGTCAGGTG
3' ss Score
11.12
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGAGGCTCTGGAGGAAGAGAAGGAGCAGGAGGACCTGTGGGTGTGGCCCAGAGAGCTCAGCAGCCCTCTCCCTACTGGCTCAGAAACAGAGCATTCACTCTCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCCTCACCTTCTCCTGGGCCTCCAAGGGTCCGTGGACCGCCTGCAGAGACTTTGCTCCCCCCGAGGGAGGGAAGCCCCACATCTACTCCTGGTGGGGCAAGAGAAGTAGGGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAGAGCGAGGAGGCAGGGAGCTCCAGCTTGGAGGATGGCCCTTCCCTACTTCCAGCTACATGGGCCCCTGTGGGTCCCAGGGAGCTGGAGACCCCCTCAGAAGAGAAGTCTGGAAGAACTGTCCTGGCAGGCACCTCAGTGCAGGCCCAGCCAGTGCTGCCCACCGACAGTGCCAGCCACGGTGGAGTGGCTGTGGCTCCCTCATCAG
Seq A exon
GTGACTGTATCCCCAGCCCCTGCCACAATGGTGGGACATGCTTGGAGGAGAAGGAGGGTTTCCGCTGCCTATGTTTGCCAGGCTATGGGGGGGACCTGTGCGATGTTG
Seq C2 exon
GCCTTCATTTCTGCAGCCCTGGCTGGGAGGCCTTCCAGGGAGCCTGCTACAAGCACTTTTCCACACGAAGGAGTTGGGAGGAGGCAGAAAGTCAGTGCCGAGCGCTAGGTGCTCATCTGACCAGCATCTGCACCCCTGAGGAGCAAGACTTTGTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004892_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAGAACTGTCCTGGCA
R:
AAAGTCTTGCTCCTCAGGGGT
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types