BtaEX6015191 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20193536-20195100:-
Coord C1 exon
chr3:20195043-20195100
Coord A exon
chr3:20194399-20194754
Coord C2 exon
chr3:20193536-20194217
Length
356 bp
Sequences
Splice sites
3' ss Seq
TGAACTTTTTGTCTACCTAGGTG
3' ss Score
9.71
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCCCCAGTTGTGTCTGATGCTGCTTCTGTCCCTCCCTCAGCTCTGCCTGGATCAGGAG
Seq A exon
GTGTTGTCTGGACACTCTCTTCAGACACCCCCCGAAGAGAGCCAGGGCCCTGAAGGGGTCTGGGGTCCTTGGGACCAGTGGGCCTCTTGCTCCCAGCCCTGCGGGGTTGGGGTACAGCGCCGAAGCCGGACATGTCAGCTCCCTACAACTCAACTCCACCAGGGCCTGCCCCTTCCACCCCGGCCCCCAAGACATCCAGAAGCCCTGCTTCCCCGGGGTCAAGGCACCAGACCGCAGACTTCCCGAGAAACCCTTCCCCTATACAGGCCACCACCTCGAGGAAGAGGTGGCCCCCTTCGAGGTCCTGCTTCTCAATTAGGGAGAGAGGAGGCTCCGGAGACTCAAGGAGCTAGGAG
Seq C2 exon
GTCCCGGGTTCGAGACCCCATCAAGCCAGGAATGTTTGGCTATGGGAGGGTGCCCTTTGCTTTGCCGCTCCATCGGAACCGCAGGCATCCCCGAAGACCACCCAGATCTGAACTCTCTCAAACCTCAGATCTTCCATCCCTGACTCCGAGAACAGAGCCATCTTCCTCAAACCACACCCAGAAAACAGAACTGTCTCCCACAGAACCTTCTGCCCACACCCTCCCACCCCAAGCAGAACCCCCAAGCCCTGAAGCTGCTCAGACAGCCGTGCCCTCTAGAGCCAGGCCTGCCCCCACAGGGCCACACCCCAGAGCCCAGGCCTCTGGCACAGAGTCCTCCTTTCATTCCCCATCCCCGGGAGAAGGTAGCTCCTTTCACCTGTCCCTTCAGCCAAGAAGGCCAAGTTCCCAGGGTTGGGCCAGCCCCAGGCTGGCAGACAGACACCCTAATCCTTTCCTTTCTGTGCCTTGGGGCCGAGGCCAGCAGAGCCAGGAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.857 C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=31.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGTGTCTGATGCTGCT
R:
CAGGCCTGGCTCTAGAGGG
Band lengths:
345-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]