MmuEX0003904 @ mm10
Exon Skipping
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95683633-95685016:-
Coord C1 exon
chr3:95684959-95685016
Coord A exon
chr3:95684361-95684698
Coord C2 exon
chr3:95683633-95684239
Length
338 bp
Sequences
Splice sites
3' ss Seq
TGACCTTCTCCCCTCTGTAGCTG
3' ss Score
10.57
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTCTGGCTGTGTATGATGCTGCTCCTGCCTCTCCCTCAGCCCTGCCAGGATCAGGAG
Seq A exon
CTGTTTGGACCTTCTCATCAGCTGCCATCAGAGGAGGGCCAGGTCCCTGAAGGCCTCTGGGGACCTTGGGGTCGATGGGCTTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCAGGAGCCGAACATGTGAACTGCACCCAGCCCTACCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCACCGGCCCCGGGGCCAGGGCTCCAGACCCCAGACTCCACGGGATCCCCAGTCTCTGTATAGGCCACAGCCTCGGGGAAGGGGTGGCCCTCTTCGAGCTCCTGCTTCTCAAGTGGGGAGAGAGGAAACCCAGGAGCCTCAAGGGGCCCAGAG
Seq C2 exon
GTTCCGGGTTCGAGACCCCATCAAGCCAGGGATGTTCGGTTATGGGAGAGTGCCTTTTGCCTTGCCTCTGCACCGGAGCCGCAGGCATCCTCACAGACCCGGGCAACCCAAGAACTCTTCTACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCTCACATGCAGCCCCCTGAACCCCGTTCTCACTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAAGTGCTCCCCAGAACTAGTTCTGCTCCTTCCTACACAGGGACCCCTGCACCTACCTCCTCTTTTGGAGACAGTAGGTCTTTCCAGGGATCCCTTGGGCCACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTTTCTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGGCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-'3-7,'3-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.785 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=28.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATGCTGCTCCTGCCTCT
R:
GAGGTAGGTGCAGGGGTCC
Band lengths:
358-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types