RnoEX0006935 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197810504-197811899:-
Coord C1 exon
chr2:197811842-197811899
Coord A exon
chr2:197811235-197811572
Coord C2 exon
chr2:197810504-197811101
Length
338 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTCCCCTCTCTAGCTG
3' ss Score
10.64
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTCTGGCTGTATGTCATGCTGCTCTTGCTTCTCCTTCAGCTCTGCCAGGATCAGGAG
Seq A exon
CTGTTGGGTCCTTCTCTTCAGACACCATCAGAGGAGGACCAGGTCCCTGAGGGTCTCTGGGGACCTTGGGGCCGATGGGCCTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCCGGAGCCGAACATGTGAACTGCACCCAGCCCTGTCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCCCCAGCCCCGGGGCCAGGGTTCCAGACCCCAGACTCCACGGGATCCCCAGTCCCTGTATAGGCCACAGCCTCGGGGAAGGGGTGGCCCTCTTCGAGGTCCTGCTTCTCAAGTGGGGAGAGAGGAGACCCAGGAGCCTCGGGGGGCCCAGAG
Seq C2 exon
GTTCCGTGTTCGAGACCCTATCAAGCCAGGGATGTTCGGTTACGGGCGAGTGCCCTTTGCTTTGCCCCTGCACCGGAGCCGCAGGCTTGCTCACAAACCTGGACAGCCCAAGGACTCCTCTACAGCGGAAGAGACACTTCCATCCCAGCCTCCAAGCACAGAACCAGCCTCTGAAAAGCACAGCCCCCACATGCAGCCCCCTGAACTGCGTGCCCAATCCCGTTCCCCCTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAAGTGCCCTCCAGAACCAGTTCTGCTCCCTCCGACATGGGTATCCCTGCACCCACTTCCTCCTTTAGAGACAGTAGGTCTTTCCAGGGATCCCCTGAGCCACGAATGCCAACTTCCCAGGGAGCAGAGCGACAGCCACATCCTTTCTCTCCTGTCACCCGGAGCCAGCTGAGCCGGAGGCACTGGAGACCTCCGGGGAGTCCTCACAGGTCCCCAGATGGCTGGCTGCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-'4-10,'4-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.761 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=28.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTCTTGCTTCTCCT
R:
GGATACCCATGTCGGAGGGAG
Band lengths:
354-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]