HsaEX0002602 @ hg19
Exon Skipping
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150525019-150525729:+
Coord C1 exon
chr1:150525019-150525076
Coord A exon
chr1:150525374-150525428
Coord C2 exon
chr1:150525640-150525729
Length
55 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTTCTCTATATAGGTG
3' ss Score
11.9
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
Exon sequences
Seq C1 exon
GCCCTGGCTGTATCTGCTGCTGCTTCTGTCCCTCCCTCAGCTCTGCTTGGATCAGGAG
Seq A exon
GTGTTGTCCGGACACTCTCTTCAGACACCTACAGAGGAGGGCCAGGGCCCCGAAG
Seq C2 exon
GACACAGTCTCGGGGAAGGGGTGGCCCACTTCGAGGTCCCGCTTCCCACCTAGGGAGAGAGGAGACCCAGGAGATTCGAGCGGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.765 C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=31.1)
C2:
PF0009014=TSP_1=WD(100=31.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATCTGCTGCTGCTTCT
R:
CTCGAATCTCCTGGGTCTCCT
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)