BtaEX6015925 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020172 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr3:32323433-32325060:+
Coord C1 exon
chr3:32323433-32323545
Coord A exon
chr3:32324230-32324299
Coord C2 exon
chr3:32324983-32325060
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTGCTCTTCCTCAGGGA
3' ss Score
10.05
5' ss Seq
TTGGTCTGT
5' ss Score
0.67
Exon sequences
Seq C1 exon
CGAGAGAACTTGCTTCGGGGTCAACAAGAGGAGGAGGACCGGCTGCTCGGAGCCATCCCCTTGTTTTGCTTCCCAGATGGGAACGAGCGGGCCCCACTCACTGAGTGTCCCAG
Seq A exon
GGAGACCTTCTCGTTCGTTCTGACCAATGTGGACGGGAGCAGGAAGATTGGATATTGCAGGCGTCTCTTG
Seq C2 exon
CCCGACGGCCATGGTCCTCGCCTCCCCAGGGTGTACTGCATCATCAGCTGCATCGGCTGCTTCGGCTTGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020172-'9-3,'9-2,10-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
PF0345613=uDENN=FE(32.4=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTTCGGGGTCAACAAG
R:
TTGGAGAACAAGCCGAAGCAG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]