DreEX6048626 @ danRer10
Exon Skipping
Gene
ENSDARG00000058666 | dennd2da
Description
DENN/MADD domain containing 2Da [Source:ZFIN;Acc:ZDB-GENE-061013-542]
Coordinates
chr8:12965961-12966589:-
Coord C1 exon
chr8:12966477-12966589
Coord A exon
chr8:12966310-12966379
Coord C2 exon
chr8:12965961-12966038
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCTATTTTACAGTGA
3' ss Score
10.37
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
AAGGATGGCATGGTGCGATTTCAGAAGGAGGAGGAAGAGAAGACGTTAAAGGCACTGACCCTCTTCTGCTTTCCGGAAGGTGTTAACTGGGCGCCCTTAACAGAATATCCCAG
Seq A exon
TGAAACATTCTCTTTCGTGCTTACAGATGTTGATGGAACAAGGAAGAATGGATACTGTAGGAGGCTGCTG
Seq C2 exon
CCTGATGGGAAGGGTGCTCGTCTGCCTGAAGCCTACTGCATCATCAGTAATGTGGCCTGTTTTGGGCTCTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058666-'8-14,'8-12,9-14=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
PF0345613=uDENN=FE(32.4=100)
C2:
PF0214116=DENN=PU(10.4=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGGCATGGTGCGATTT
R:
GCCCAAAACAGGCCACATTAC
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]