HsaEX0019145 @ hg19
Exon Skipping
Gene
ENSG00000162777 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:26192]
Coordinates
chr1:111738538-111741364:-
Coord C1 exon
chr1:111741252-111741364
Coord A exon
chr1:111740542-111740611
Coord C2 exon
chr1:111738538-111738678
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTGCTCTTTCTTAGGGA
3' ss Score
10.03
5' ss Seq
TTGGTCTGT
5' ss Score
0.67
Exon sequences
Seq C1 exon
CGGGAGAACCTGCTTCGGGGTCAGCAGGAGGAGGAGGAGCGGCTGCTCAAAGCTATCCCCTTGTTCTGCTTCCCAGATGGGAATGAGTGGGCATCACTCACCGAGTATCCCAG
Seq A exon
GGAGACCTTCTCCTTCGTTCTGACCAATGTGGATGGGAGCAGAAAGATTGGATACTGCAGGCGCCTCTTG
Seq C2 exon
ATCCTGGATGAAGTGGAGAAGAGACATCAGATCTCCATGGCTGTCATCTACCCGTTCATGCAGGGCCTCCGAGAGGCAGCCTTCCCTGCTCCTGGGAAGACTGTCACTCTCAAGAGCTTCATCCCCGACTCAGGCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777_MULTIEX1-2/8=1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
PF0345613=uDENN=FE(32.4=100)
C2:
PF0214116=DENN=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAATGAGTGGGCATCAC
R:
AGTCGGGGATGAAGCTCTTGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)