GgaEX1019282 @ galGal3
Exon Skipping
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1015066-1016254:+
Coord C1 exon
chr26:1015066-1015178
Coord A exon
chr26:1015261-1015330
Coord C2 exon
chr26:1016177-1016254
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGCACTGTATCTCCTTGCAGCGA
3' ss Score
10.34
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGTGAGAACCTCCTGAAGGGTCAGAAGGAGGAGGAGGAGCGGCTCCTGCAGGCCATCCCCCTCTTCTGCTTCCCCGATGGCAACAACTGGGAGCCCGTCACCACCTTCCCCAG
Seq A exon
CGAAACCTTTTCCTTTGTCCTGACAAACGTGGATGGCAGCAGGAAGATTGGTTACTGCAGGAGGCTGCTG
Seq C2 exon
CCCTCTGGCCGCGGTGTCCGCCTCCCCGAGGTCTTCTGCATCATCAGCTGCCTGGGCTGCTTCGGGCTCTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
PF0345613=uDENN=FE(32.4=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAAGGAGGAGGAGGAGC
R:
CTTGGAGAAGAGCCCGAAGC
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]