MmuEX0014262 @ mm9
Exon Skipping
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106290769-106293330:+
Coord C1 exon
chr3:106290769-106290881
Coord A exon
chr3:106291490-106291559
Coord C2 exon
chr3:106293253-106293330
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTGGTCTGCTCTCTCTTAGGGA
3' ss Score
8.98
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
AGGGAGAACCTGCTCCGAGGTCAGCAGGAGGAGGAGGACCGGTTGCTCAGTGCCATCCCTTTGTTCTGCTTCCCTGATGGAAATGAGTGGGCACCACTCACAGAGTATCCCAG
Seq A exon
GGAGACCTTCTCATTTGTCCTGACCAATGTGGATGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCTG
Seq C2 exon
CCTGCCGGTCCTGGTCCTCAACTTCCCAAAGTGTACTGCATCATCAGCTGCATCGGCTGCTTCGGCTTGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
PF0345613=uDENN=FE(32.4=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCAGCAGGAGGAGGAG
R:
TTGGAGAACAAGCCGAAGCAG
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: