BtaEX6016220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35641341-35648848:+
Coord C1 exon
chr3:35641341-35641444
Coord A exon
chr3:35643073-35643172
Coord C2 exon
chr3:35648753-35648848
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTCTATCTTTTCCTTTCAGGTT
3' ss Score
13.02
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
GAACTTGTGAAAGTTCATCGGAACCTAATGCAAGAGATTCATGATTCCATTGTGAATAAAAATGACCAGAACTTGTATCAAGTTTTCATTAACTACAAGGAAAG
Seq A exon
GTTGGTTATTTACGGGCAGTACTGCAGTGGCGTGGAGTCGGCCATCTCTAGTTTAGACTACATTTCTAAGACAAAAGAGGATGTCAGACTGAAATTAGAG
Seq C2 exon
GAATGTTCTAAAAGAGCAAACAATGGGAAATTTACTCTTCGAGATTTGCTTGTGGTTCCTATGCAGCGTGTTTTGAAGTATCACCTTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(19.4=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCGGAACCTAATGCAAGA
R:
AGGTGATACTTCAAAACACGCTG
Band lengths:
178-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]