MmuEX6073516 @ mm9
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109311702-109319001:+
Coord C1 exon
chr3:109311702-109311805
Coord A exon
chr3:109313804-109313903
Coord C2 exon
chr3:109318906-109319001
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTCTTCCTTTCAGATT
3' ss Score
12.08
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
GACCTTGTAAAAGTTCATCGGAGCTTAATGCAAGAGATTCATGATTCCATTGTAAATAAAGATGACCAGAACTTGTATCAAGTTTTTATTAACTACAAGGAAAG
Seq A exon
ATTGGTTATTTATGGGCAGTACTGCAGTGGAGTGGAGTCAGCCATCTCTAACCTAGACTACATCTCTAAGACAAAAGAAGATGTCAAACTGAAATTAGAG
Seq C2 exon
GAATGTTCAAAAAGAGCCAATAACGGGAAGTTTACTCTGCGCGATTTGCTGGTCGTTCCAATGCAGCGCGTGCTGAAGTATCACCTCCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(19.4=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGTAAAAGTTCATCGGAGCT
R:
TGAAGGAGGAGGTGATACTTCAG
Band lengths:
198-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: