DreEX6095612 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29634337-29635082:-
Coord C1 exon
chr24:29634979-29635082
Coord A exon
chr24:29634806-29634905
Coord C2 exon
chr24:29634337-29634432
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTACTCTGCTATAGATT
3' ss Score
8.06
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATCTTGTGAAAGTGCACACGAGTCTCCTGAGGGAAGTGCAGGATTCAGTGCTCATGCACAACGCCACAAACCTCTACCAGATCTTCATCAAATACAAAGAAAG
Seq A exon
ATTAGTCCTGTACGGCAAATACTGCAGTCAAGTGGAATCTGCCATTGCATGTCTGGATGACATCTGTAAGAACAGAGAGGACGTCCGGCAGATGCTAGAG
Seq C2 exon
TTGTGTTCAAAGCGAGCCAATAATGGGAAGTTTACTCTCAGAGACCTGCTGGTTGTCCCGATGCAGAGAGTTTTAAAGTATCACCTGCTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'7-23,'7-17,13-23=AN
Average complexity
A_C3
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF060426=DUF925=PD(20.3=74.3),PF0219410=PXA=FE(27.0=100),PF0062115=RhoGEF=FE(23.4=100)
A:
PF0219410=PXA=FE(26.2=100),PF0062115=RhoGEF=FE(22.8=100)
C2:
PF0062115=RhoGEF=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]