RnoEX0097880 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212410397-212417203:+
Coord C1 exon
chr2:212410397-212410500
Coord A exon
chr2:212412643-212412742
Coord C2 exon
chr2:212417108-212417203
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTCCTTCCTTCCAGATT
3' ss Score
11.74
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GACCTTGTAAAAGTTCATCGGAGCTTAATGCAAGAGATTCACGATTCCATTGTAAATAAAGATGACCATAACTTGTATCAAGTTTTTATTAACTACAAGGAAAG
Seq A exon
ATTGGTTATTTATGGACAGTACTGCAGTGGAGTGGAGTCAGCCATCTCTAGCCTAGACTACATCTCTAAGACAAAAGAAGATGTCAGACTGAAACTAGAG
Seq C2 exon
GAATGTTCAAAGAGAGCCAATAATGGGAAATTTACTCTGCGTGATTTGCTGGTAGTTCCCATGCAGCGGGTGCTGAAATATCACCTCCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'12-11,'12-9,13-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(19.4=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGTAAAAGTTCATCGGAGCT
R:
CTGAAGGAGGAGGTGATATTTCAG
Band lengths:
199-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]