GgaEX1062983 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1074610-1078099:-
Coord C1 exon
chr8:1077996-1078099
Coord A exon
chr8:1075703-1075802
Coord C2 exon
chr8:1074610-1074705
Length
100 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTGCCTTGATTTAGATT
3' ss Score
9.22
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GACTTGGTGAAAATTCACAGGAGTCTAACACAGGACATCAGTGATTCCATTATTAACAAAAACGATCAGAACTTGTATCAAATTTTTATTAACTACAAGGAGAG
Seq A exon
ATTGGTTATTTATGGACAGTACTGCAGCCAAGTGGAAACAGCCATATCGTGCTTAGACAACATTTCTAAGACAAAAGAAGATGTTAAGTTGAAATTAGAG
Seq C2 exon
GAATGTTCCAAGAGGGCCAATAATGGGAAATTTACTTTGCGGGATCTTTTAGTGGTTCCAATGCAAAGAGTGCTAAAATACCACCTACTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'9-15,'9-11,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(19.4=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGAGTCTAACACAGGACA
R:
CTGGAGCAGTAGGTGGTATTT
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]