BtaEX6016226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35519208-35627614:+
Coord C1 exon
chr3:35519208-35519324
Coord A exon
chr3:35625072-35625130
Coord C2 exon
chr3:35627549-35627614
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCCTCTTTTCTCAGGTA
3' ss Score
11.68
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTTCTCTGTTTGAAGAACATAAGGACATTCCTCACGGCCTGTTGTGAGACGTTTGGAATGAGAAAGAGTGAACTGTTCGAGGCATTTGACCTGTTTGATGTCCGTGACTTCGGAAAG
Seq A exon
GTAATAGAAACGTTATCGCGACTTTCTCGCACACCTATAGCGTTGGCCACAGGAATCAG
Seq C2 exon
GCCCTTCCCGACAGAAGAAAGCATTAATGATGATGACATCTACAAAGGCCTGCCCGATTTAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(39.5=87.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTGTGAGACGTTTGGA
R:
GGGCAGGCCTTTGTAGATGTC
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]