DreEX6095608 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29647575-29710105:-
Coord C1 exon
chr24:29709989-29710105
Coord A exon
chr24:29647732-29647790
Coord C2 exon
chr24:29647575-29647640
Length
59 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATTTTTCTCTTAGGTT
3' ss Score
9.01
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTCTCTGCCTGAAGAACATCAGGACATTTTTGCACGCCTGCTCAGAGATATTCGGCATGAAGAAAAGCGAGCTGTTCGAAGCGTTCGATTTGTTCGATGTTCGGGATTTCGGAAAG
Seq A exon
GTTATGGACACGCTGTCCAAACTCTCTCATACGCACATTGCACAGCAGACTGGAATAAG
Seq C2 exon
GCCGTTTCCCACAGAAGAGAGTGTTGAGGATGAAGACATTTATAACCATCTTGAGGATCTGATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'2-7,'2-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF060426=DUF925=PU(7.8=43.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCCTGAAGAACATCAG
R:
CTCTCTTCTGTGGGAAACGGC
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]