GgaEX0002321 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1080593-1107865:-
Coord C1 exon
chr8:1107739-1107865
Coord A exon
chr8:1081537-1081595
Coord C2 exon
chr8:1080593-1080658
Length
59 bp
Sequences
Splice sites
3' ss Seq
GGTTAATTTCTTTTTTCCAGGTG
3' ss Score
9.23
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTCCCTTAGTTTCTCTGCTTGAAGAACATAAGGACTTTTCTTTCGGCATGTTGTGAAATATTTGGGATGAAGAAAAGTGAACTTTTTGAAGCATTCGATTTGTTTGATGTGAGAGACTTCGGAAAG
Seq A exon
GTGATTGAAACACTCTCAAAACTTTCCCGCACTCCTATTGCAATAGGCACAGGAATAAG
Seq C2 exon
GCCCTTCCCCACAGAAGAAAGTGTTGATGATGAAGATGTCTACAAATGTCTTCCTGATTTGATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'8-5,'8-4,12-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(75.6=87.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTAGTTTCTCTGCTTGAAGA
R:
CTTTCTTCTGTGGGGAAGGGC
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]