HsaEX6032472 @ hg38
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107777231-107875017:-
Coord C1 exon
chr1:107874901-107875017
Coord A exon
chr1:107779434-107779492
Coord C2 exon
chr1:107777231-107777296
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCCTCTTTTCTCAGGTT
3' ss Score
10.41
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTTCTCTGTTTGAAGAACATAAGGACATTTCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG
Seq A exon
GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAG
Seq C2 exon
GCCCTTCCCAACAGAAGAAAGCATTAATGATGAAGACATCTACAAAGGCCTTCCTGATTTAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-'13-15,'13-12,21-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(39.5=87.2)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000527011fB29701
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTGTGAGACGTTTGGA
R:
TCAGGAAGGCCTTTGTAGATGT
Band lengths:
138-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains