MmuEX6073522 @ mm9
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109226909-109299871:+
Coord C1 exon
chr3:109226909-109227025
Coord A exon
chr3:109297696-109297754
Coord C2 exon
chr3:109299806-109299871
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTTTCCCCCCAGGTT
3' ss Score
13.41
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTTCTCTGTTTGAAGAACATCCGGACATTCCTGGCCGCCTGCTGCGATACCTTTGGAATGAGGAAAAGTGAACTTTTTGAGGCATTTGACCTATTTGATGTTCGAGACTTTGGAAAG
Seq A exon
GTTATAGAAACATTATCTCGGCTATCCCGAACACCAATAGCATTGGCCACAGGAATCAG
Seq C2 exon
GCCGTTCCCCACTGAAGAAAGTATAAATGATGAAGACATCTACAAAGGCCTTCCCGACTTAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(39.5=87.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGCGATACCTTTGGAA
R:
AGTCGGGAAGGCCTTTGTAGA
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: