DreEX0084176 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16440275-16487412:-
Coord C1 exon
chr2:16487296-16487412
Coord A exon
chr2:16443184-16443242
Coord C2 exon
chr2:16440275-16440340
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTGTCTTTCCAGGTC
3' ss Score
13.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTCTCTGTCTGAAGAATATCCGTACATTCCTGTCTGCATGCTGTGAAGAATTTGGGATGAAGAAGAGTGACTTGTTTGAGGCCTTCGATCTCTTTGATGTCCGTGATTTTGGAAAG
Seq A exon
GTCATCGACACACTATCAAAACTCTCATATACGCCTGTTGCTCAACAGAGTGGCATCAG
Seq C2 exon
GTCGTTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATACATCCATTTGGCAGATCTCATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.130
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(39.5=87.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGCTGTGAAGAATTTGGG
R:
TCGATGAGATCTGCCAAATGGA
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]