BtaEX6016263 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40639760-40646077:+
Coord C1 exon
chr3:40639760-40639813
Coord A exon
chr3:40641052-40641105
Coord C2 exon
chr3:40646024-40646077
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCTTACACTGCAGGGA
3' ss Score
10.05
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTCCACCTGGTCCTCCAGGCCCAAGAGGTCCTCAAGGTCCCAATGGAGCTGAT
Seq A exon
GGACCACAAGGACCTCCAGGATCCATTGGCTCAGTTGGTGGTGTTGGAGAAAAG
Seq C2 exon
GGTGAACCTGGAGAAGCAGGGAACCCAGGGCCTCCTGGGGAAGCAGGCACAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'55-57,'55-56,56-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCACCTGGTCCTCCA
R:
ACCTGTGCCTGCTTCCCC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]