BtaEX6016579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50492442-50492941:-
Coord C1 exon
chr3:50492836-50492941
Coord A exon
chr3:50492664-50492716
Coord C2 exon
chr3:50492442-50492546
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTCTTTTCCAGGAT
3' ss Score
13.19
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCGTATACAAGAAAAATGATTCAGAAAACTGCTGAGCCACCTTTG
Seq A exon
GATAAGGAGTCAATTTCAGAGAATCCTAGTTTGGATTTACCTTGTTCTATAGG
Seq C2 exon
GAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGTATTTCCAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393-'25-20,'25-18,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACCTGGCCCGTATACAA
R:
AGTTTCTTTTGCACTGGAAGCAC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]