GgaEX1037347 @ galGal3
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14692803-14693379:-
Coord C1 exon
chr8:14693271-14693379
Coord A exon
chr8:14693046-14693104
Coord C2 exon
chr8:14692803-14692907
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTACTCTTCTTTTTTCTTAGGAT
3' ss Score
10.34
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
Seq A exon
GATACTGAACCAGTTCCAGTGATAGAGACCCCAGCCTTGGAATTACCCTGCTCTGTTGG
Seq C2 exon
GAAATCCGATGGAACTGCACATTCATCCAATACCTCAGATGTGGAATCCACAGGTGCTGCCAGTATAAAAGAAACTACCTCATCTAGCATATCCAGACATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF124463=DUF3682=PU(28.1=73.0)
A:
PF124463=DUF3682=FE(19.8=100)
C2:
PF124463=DUF3682=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACCTGGTCCCTATACA
R:
TCTTTTATACTGGCAGCACCTG
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]