MmuEX6019384 @ mm9
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108533039-108533549:+
Coord C1 exon
chr5:108533039-108533144
Coord A exon
chr5:108533285-108533337
Coord C2 exon
chr5:108533445-108533549
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGTAATTTTCAGGAT
3' ss Score
11.74
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCTCCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTG
Seq A exon
GATAAGGAATCAGTTTCAGAGAATCCTACGTTGGATTTACCTTGTTCTATAGG
Seq C2 exon
GAGAACTGAGGGAATTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAACGAAACTACCTCGGCTAGCATTTCCAGGCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-'30-28,'30-26,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTCCTGGCCCATATACA
R:
AGCCGAGGTAGTTTCGTTTGC
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: