GgaEX1037347 @ galGal4
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12942581-12944013:-
Coord C1 exon
chr8:12943843-12944013
Coord A exon
chr8:12942824-12942882
Coord C2 exon
chr8:12942581-12942685
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTACTCTTCTTTTTTCTTAGGAT
3' ss Score
10.34
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
Seq A exon
GATACTGAACCAGTTCCAGTGATAGAGACCCCAGCCTTGGAATTACCCTGCTCTGTTGG
Seq C2 exon
GAAATCCGATGGAACTGCACATTCATCCAATACCTCAGATGTGGAATCCACAGGTGCTGCCAGTATAAAAGAAACTACCTCATCTAGCATATCCAGACATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCGTGTTCCTCCTGTGCC
R:
TGAATGTGCAGTTCCATCGGA
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]