DreEX0047738 @ danRer10
Exon Skipping
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10826785-10827306:-
Coord C1 exon
chr2:10827204-10827306
Coord A exon
chr2:10826994-10827052
Coord C2 exon
chr2:10826785-10826892
Length
59 bp
Sequences
Splice sites
3' ss Seq
TAAATCATTTTATTCTGTAGAAT
3' ss Score
7.63
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCTGTTACTAACGGAGCAGTGAAGAAAGGAAAGAGGAAGTACCACACACACTCTTTAGAGACGTTGGCCAAATTGAGAAGGTCAAGTGAACTTCTGGCACAG
Seq A exon
AATGATGAAAAGTTTCCAACTATAGATAATAACTCACTAGACCTGATGGCCTCAAAAAG
Seq C2 exon
TGCCAAAAGTGAAACATTTTTGCCTTCATCAAGTACCTCAGATGTTGAATCGGTTGGAGCCACCAGCACCAGTGAAACTACCTCAACCACCCTCTCAAGGCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGGCCAAATTGAGAAGGT
R:
CCTTGAGAGGGTGGTTGAGGT
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]