BtaEX6016727 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55257714-55268611:-
Coord C1 exon
chr3:55268426-55268611
Coord A exon
chr3:55267352-55267461
Coord C2 exon
chr3:55257714-55257857
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAATTGTAATTACAGATG
3' ss Score
5.38
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTACTTTGGAAGTTCGTCTTATGGGCTGTCAAGATATCCTAGAGAATGTCCCTGGACGGTCGAAAGCAGCATCAGTTGCACTACCTGGTTGGAGTCCAAGTGAGACCAGATCATCCTTCATGAGCAGAACAAGTAAAAGTAAAAGCGGAAGTAGTCGAAATCTACTAAAAACTGATGACTTATCCA
Seq A exon
ATGATGTCTGTGCAGTTTTGAAGCTGGACAATACTGTGGTTGGTCAAACTAGCTGGAAACCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
Seq C2 exon
TCACGTGAACTGGAAATTTCAGTTTATTGGCGTGATTGGCGATCTCTGTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAACGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACTTTATTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900-'17-16,'17-14,19-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCGAAAGCAGCATCAGTT
R:
ATAGAGACACATGCCATGCCG
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]