GgaEX1044086 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14125889-14128177:-
Coord C1 exon
chr8:14127992-14128177
Coord A exon
chr8:14127594-14127703
Coord C2 exon
chr8:14125889-14126032
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTACTTTACTTACAGATG
3' ss Score
9.48
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
Seq A exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
Seq C2 exon
TCACGTGAATTGGAAATCTCAGTTTATTGGCGTGACTGGAGATCCCTGTGTGCAGTGAAGTTTCTGAGGCTGGAAGATTTCCTGGACAACCAACGGCATGGCATGTGTCTGTATCTTGAGCCCCAGGGCACTCTGTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCGATCGAAAGCCACAT
R:
ATACAGACACATGCCATGCCG
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]