MmuEX6074482 @ mm9
Exon Skipping
Gene
ENSMUSG00000004591 | Pkn2
Description
protein kinase N2 [Source:MGI Symbol;Acc:MGI:109211]
Coordinates
chr3:142474878-142484668:-
Coord C1 exon
chr3:142484483-142484668
Coord A exon
chr3:142483501-142483610
Coord C2 exon
chr3:142474878-142475021
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTTAAAATTGTAATTACAGATG
3' ss Score
4.71
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTACTTTGGAAGTTCGTCTTATGGGGTGCCAAGATATCCTAGAGAATGTACCTGGACGGTCAAAAGCAACGTCGGTAGCACTACCTGGGTGGAGTCCAAGTGACAACAGATCGTCTTTTATGAGCAGAACCAGCAAGAGTAAAAGTGGGAGTAGTCGCAACCTCCTGAAAACGGATGACTTGTCCA
Seq A exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTAGCTGGAAACCCATTTCAAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
Seq C2 exon
TCACGTGAACTGGAAATTTCAGTTTATTGGCGTGATTGGCGATCTCTGTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAGCGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACTTTGTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004591-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF051368=Phage_portal_2=FE(32.5=100)
C2:
PF051368=Phage_portal_2=FE(42.1=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGACGGTCAAAAGCAAC
R:
ATAGAGACACATGCCATGCCG
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: