DreEX0006838 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25338672-25347395:-
Coord C1 exon
chr6:25347210-25347395
Coord A exon
chr6:25342625-25342734
Coord C2 exon
chr6:25338672-25338815
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGCTGGTATGGCAGATG
3' ss Score
6.08
5' ss Seq
CGGGTAATG
5' ss Score
6.86
Exon sequences
Seq C1 exon
GCACATTAGACGTGAGGCTCATGGGCTGTCAGGACCTTCTGGAGAACGTCCCGGGTCGCTCGAAGACAGCATCTGTTTCTCTGCCCGGCTGGAGCCCTAGTGAAGCACGCTCTTCATTTATGAGCCGAGGAAACAAGAACAAATCTGGCAGCAGCAGAACCCTCTCCAAGTCTGATGATCTGTCCA
Seq A exon
ATGAAATCAGTGCCGTTCTAAAGTTGGACAACACAGTTGTGGGACAGACCCATTGGAAGCCAGTTAGCAACCAATCTTGGGACCAGAAGTTCACGCTGGAACTTGACCGG
Seq C2 exon
TCTCGTGAGCTGGAGATTGCTGTGTATTGGAGAGACTGGCGCTCGCTGTGTGCAGTGAAGTTTTTACGTCTAGAGGACTTCCTGGATAACCAACGGCACGGCATGTGCCTCTACCTGGAACCACAAGGAACACTGTTTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCGAAGACAGCATCTGTT
R:
GTTCCAGGTAGAGGCACATGC
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]