GgaEX1044086 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:15884707-15886899:-
Coord C1 exon
chr8:15886714-15886899
Coord A exon
chr8:15886316-15886425
Coord C2 exon
chr8:15884707-15884754
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTACTTTACTTACAGATG
3' ss Score
9.48
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
Seq A exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
Seq C2 exon
TCACGTGAATTGGAAATCTCAGTTTATTGGCGTGACTGGAGATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCTGGAAGTTAGGCTAATGG
R:
CAGGGATCTCCAGTCACGCC
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]