BtaEX6016956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:66999569-67011323:-
Coord C1 exon
chr3:67011126-67011323
Coord A exon
chr3:67003833-67004054
Coord C2 exon
chr3:66999569-66999754
Length
222 bp
Sequences
Splice sites
3' ss Seq
CAATCTTAATTTTTTTGAAGGAA
3' ss Score
5.47
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTAGTAGATGATGACACCCCAGAGATGTATAAAACAATCTCTCAAGAATCTCTTATACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAGGAGCGGAAACATAAACTAGAGATGGAAAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAGAG
Seq A exon
GAAGAGGAAGAAAATGAAACCTTTGAACTGAGCAGGGAATATGAAGAATTAATCAAATTGAAAAGGAGTGGTTCTATTCAAGCTAAAAATTTAAAAAGCAAGTTTGAAAAAATTGGACAATTGTCTGAAAAAGAAATTCAGAAAAAGATAGAAGAAGAACGAGCACGAAGAAGAGCAATTGACCTTGAAATTAAAGAGAGAGAAGCAGAAAACTTTCATGAG
Seq C2 exon
GAGGAAGATGTTGATATTAAGCCTGCAAAAAAAAGTGAGGCTCCATTTACTCATAAAGTGAATATGAAAGCTAGATTTGAACGTATGGCTAAAGCAAGAGAAGAAGAAGAACAAAGAAGAATTGAAGAGCAAAAGTTACTACGCATGCAGTTTGAACAAAAGGAAATTGATGCAGCACTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.392 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATGACACCCCAGAGATGT
R:
TCTCTTGCTTTAGCCATACGTTCA
Band lengths:
294-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]