HsaEX0042628 @ hg38
Exon Skipping
Gene
ENSG00000162614 | NEXN
Description
nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr1:77933282-77942208:+
Coord C1 exon
chr1:77933282-77933479
Coord A exon
chr1:77935823-77936044
Coord C2 exon
chr1:77942023-77942208
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTTATTAATTTTTTTTGAAGGAA
3' ss Score
6.55
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTAGTAGATGATGACTCCCCAGAGATGTATAAGACAATCTCTCAAGAATTTCTTACACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAAACGACGAACAGAGGAGGAACGGAAGCATAAGCTAGAAATGGAGAAACAAGAATTTGAACAACTGAGACAGGAAATGGGAGAG
Seq A exon
GAAGAGGAAGAAAATGAAACCTTTGGATTGAGCAGAGAATATGAAGAACTGATCAAATTAAAAAGGAGTGGCTCTATTCAAGCTAAAAACCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAATACAGAAAAAAATAGAAGAAGAGCGAGCAAGAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCTGAAAATTTTCATGAG
Seq C2 exon
GAAGATGATGTTGATGTTAGGCCTGCAAGAAAAAGCGAGGCTCCATTTACTCACAAAGTGAATATGAAAGCTAGATTTGAACAAATGGCTAAGGCAAGAGAAGAAGAAGAACAAAGAAGAATTGAAGAACAAAAGTTACTACGCATGCAGTTTGAACAAAGGGAAATTGATGCAGCACTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162614_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.405 C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATGACTCCCCAGAGATGT
R:
TCTTCTTCTCTTGCCTTAGCCA
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development