RnoEX0059432 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257455566-257461327:-
Coord C1 exon
chr2:257461130-257461327
Coord A exon
chr2:257459921-257460142
Coord C2 exon
chr2:257455566-257455751
Length
222 bp
Sequences
Splice sites
3' ss Seq
GAAATCTTATTCTTTTGAAGGAA
3' ss Score
7.3
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAG
Seq A exon
GAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAG
Seq C2 exon
GATGATGATGTTGATGTAAAACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGTGAACATGAAAGCCAGATTTGAACAAATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATTGAAGAACAGAAGTTACTGCGGATGCAGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.427 C2=0.803
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAACGCCTGGAAAACTGGA
R:
TGCATCCGCAGTAACTTCTGT
Band lengths:
297-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]