GgaEX0013104 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19618781-19622317:-
Coord C1 exon
chr8:19622117-19622317
Coord A exon
chr8:19620790-19621011
Coord C2 exon
chr8:19618781-19618966
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTTATTTCTAACAGCTG
3' ss Score
9.64
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGCTGGATGATGATGAATCACCGGAAATGTTTAAAACATTTTCTCAAGAATCTCTCATCCCTGGTAAACTGGAAATTAATTTTGAGGAGATGCTGAGACAAAAGATGGAAGAAGAAAAGAGACGCACGGAAGAGGAGCGTAGGCAAAAGTTGGAAATGGAAAAGCAAGAATTCCAACAACTAAGACAAGAAATGGGAGAG
Seq A exon
CTGGAAGAGGAGTCTGAAACTTTTGAGCTAAGCAAAGAATATGAAGAATTAATAAAGCTAAAAAGAAGTGGTTCTATTCAAGCGAAGAATCTGAAAAGCAAGTTTGAGAAGATAGGACAATTGTCTCAAGAAGAAATACAAAAGAAGATTGAAGAAGAACGAGCCAAAAGAAGAGCAATGGATGAAGAAATAAGAGAAAGGGAAGCTGAGAAGTTTCAAGAG
Seq C2 exon
GATGATGAGGTAGATGTGAGACCAGCCAAGAAATCTGAGGCTCCATTTACTCATAAAGTAAATATGAAGGCACGTTTTGAGCAAATGGCAAGGGCTAGGGAAGAAGAAGAACAGAGGAGAATTGAAGAACAAAAATTACTACGCATGCAGTTCGAACAAAAAGAAATTGATGCTGCATTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=0.541 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATCCCTGGTAAACTGGA
R:
TGTTCGAACTGCATGCGTAGT
Band lengths:
308-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]