BtaEX6016970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67202422-67204890:+
Coord C1 exon
chr3:67202422-67202548
Coord A exon
chr3:67203513-67203682
Coord C2 exon
chr3:67204809-67204890
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGAATTACTGTCCTTAATAGGAA
3' ss Score
7.96
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGGACACTATATTGCCTACTGCCGAAACAATTTAAATAATCTCTGGTATGAATTTGACGACCAGAGTGTCACTGAAGTTTCAGAGTCTACTGTACAAAATGCAGAAGCTTATGTTCTCTTCTACAG
Seq A exon
GAAGAGCAGTGAAGAAGCACAAAAAGAGAGGCGAAGAATATCAAATTTGTTGAACATAATGGAACCAAGTCTCCTTCAGTTTTATATTTCTCGACAGTGGCTAAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATTCATGGAG
Seq C2 exon
GTGTTCCTCCACGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761-'25-32,'25-30,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(7.7=95.3)
A:
PF063377=DUSP=PU(43.8=55.2)
C2:
PF063377=DUSP=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACACTATATTGCCTACTGCC
R:
ATAGGTTATCCCAAATGTTCTGAGGC
Band lengths:
202-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]