DreEX6025634 @ danRer10
Exon Skipping
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8957869-8963224:+
Coord C1 exon
chr2:8957869-8957995
Coord A exon
chr2:8960734-8960903
Coord C2 exon
chr2:8963143-8963224
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTGTGTGTAACAGGAA
3' ss Score
10.08
5' ss Seq
GAGGTGACG
5' ss Score
5.93
Exon sequences
Seq C1 exon
GTGGCCACTATATTGCCTATTGTCGGAATGAGCTGAACCAACTGTGGTACGAGTTTGACGACCAGAGCGTTACTGAAGTGTCAGAGTCCTGTGTTCAAAACGCTGAGGCATATGTGCTCTTTTACAA
Seq A exon
GAAGAGTAATGATGAGACTCAGAAGGAAAGGAGGAAGGTGACCAGTCTGTTCAACATGATGGAGCCAAGCCTCCTGCAGTTCTACGTCTCCCGCCAGTGGCTGAACAAGTTCAAAACTTTTGCTGAGCCAGGACCCATTTCCAACCATGACTTCCTGTGTGCCCATGGAG
Seq C2 exon
GTATTCCGCCGAATAAGGCCGCATACATTGATGACCTTGTTTTGATGATTCCCCAAAACGTGTGGGACCATCTCTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(8.0=95.3),PF063377=DUSP=PU(13.3=34.9)
A:
PF063377=DUSP=FE(50.4=100)
C2:
PF063377=DUSP=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACTATATTGCCTATTGTCG
R:
GCTATAGAGATGGTCCCACACG
Band lengths:
206-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]