RnoEX0097239 @ rn6
Exon Skipping
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257591662-257593973:+
Coord C1 exon
chr2:257591662-257591788
Coord A exon
chr2:257592999-257593168
Coord C2 exon
chr2:257593892-257593973
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGAGTCCTTGTCCTCAACAGGAA
3' ss Score
9.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGGGCACTACATTGCCTACTGCAGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACCGTACAGAATGCCGAAGCCTACGTCCTTTTCTACAG
Seq A exon
GAAGAGCAGTGAAGAGGCACAAAGGGAGAGGCGAAGGATATCCAATTTGTTGAACATAATGGAGCCAAGCCTCCTTCAGTTCTATATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGACTTTCTCTGTATTCATGGAG
Seq C2 exon
GTATTCCTCCACGAAAAGCAAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-'24-31,'24-29,26-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(7.8=95.3)
A:
PF063377=DUSP=PU(43.8=55.2)
C2:
PF063377=DUSP=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGCAGAAACAATTTAAATAA
R:
TGCTGTAGAGGTTATCCCAAATGT
Band lengths:
194-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]