HsaEX0069764 @ hg38
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77713200-77718047:-
Coord C1 exon
chr1:77717867-77718047
Coord A exon
chr1:77714614-77714783
Coord C2 exon
chr1:77713200-77713281
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTAATCATTGTCCTTAATAGGAA
3' ss Score
8.25
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTTTGTGCATCCACCTTAAAAGATTCAGACATGAACTAATGTTTTCCACCAAAATCAGTACCCATGTTTCATTTCCGCTAGAAGGCTTGGATCTTCAGCCATTTCTTGCTAAGGATAGTCCAGCTCAAATTGTGACATATGATCTTCTGTCAGTCATTTGCCATCATGGAACTGCAAGTA
Seq A exon
GAAGAGCAGCGAAGAGGCACAAAAAGAGAGGAGAAGGATATCAAATTTATTGAACATAATGGAACCAAGCCTCCTTCAGTTTTATATTTCTCGACAGTGGCTTAATAAATTTAAGACCTTTGCCGAACCTGGCCCTATTTCAAATAATGACTTTCTTTGTATTCATGGAG
Seq C2 exon
GTGTTCCTCCAAGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254_MULTIEX2-2/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.3=100)
A:
PF063377=DUSP=PU(43.8=55.2)
C2:
PF063377=DUSP=FE(37.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCCACCTTAAAAGATTCAGACA
R:
TCCCAAATGTTCTGAGGCAGC
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development