GgaEX6044529 @ galGal3
Exon Skipping
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19706606-19709849:+
Coord C1 exon
chr8:19706606-19706732
Coord A exon
chr8:19707946-19708115
Coord C2 exon
chr8:19709768-19709849
Length
170 bp
Sequences
Splice sites
3' ss Seq
GATTATTATTTCTGAAATAGGAA
3' ss Score
6.82
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGGACATTATATAGCTTATTGTCGAAACAATTTAAATAATCTGTGGTATGAATTTGATGACCAAAGTGTCACAGAGGTTTCAGAATCCACAGTGCAAAATGCGGAAGCCTATGTTCTCTTCTACAG
Seq A exon
GAAGAGTAATGAAGAAGCTCAAAGAGAGAGGCGGAGAATATCAAGTCTACTGAATATGATGGAACCAAGTCTTCTGCAGTTCTATGTTTCAAGACAGTGGTTAAATAAATTCAAGACTTTTGCAGAGCCAGGACCAATTTCAAATAATGACTTCCTTTGTATGCACGGAG
Seq C2 exon
GAGTTCCTCCCCACAAAGCTAGCTTCATAGAGGACCTGGTTGTAATGCTACCTCAAAATATATGGGATAATCTGTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'25-27,'25-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(7.7=95.3)
A:
PF063377=DUSP=PU(44.6=56.9)
C2:
PF063377=DUSP=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACATTATATAGCTTATTGTCGA
R:
ATTTTGAGGTAGCATTACAACCAGGT
Band lengths:
186-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]