BtaEX6016991 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017411 | AK5
Description
Bos taurus adenylate kinase 5 (AK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001083757]
Coordinates
chr3:67559660-67597807:-
Coord C1 exon
chr3:67597638-67597807
Coord A exon
chr3:67597428-67597541
Coord C2 exon
chr3:67559660-67559851
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTAAAAAAAAGGAA
3' ss Score
4.06
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGTCCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATCGCAGAACGTTATGGATTTCAGTACATTTCAGTAGGAGAATTATTAAGGAAGAAGATCCACAGTACCAGCAGCAATAGGAAATGGAGTCTTATTGCCAAAATAATTACAACTGGAGAACTGGCCCCACAG
Seq A exon
GAAACAACAATTACAGAGATAAAACAAAAATTGATGCAAATGCCTGATGAAGTGGGCATTGTTATCGATGGATTTCCAAGAGACGTCGCTCAGGCTCTATCTTTTGAGGACCAA
Seq C2 exon
ATCTGTACTCCTGACTTGGTGGTCTTCCTGGCTTGCACCAATCAGAGACTCAAAGAAAGATTACTGAAGCGTGCAGAGCAACAGGGGAGACCTGATGACAATCTGAAAGCTACCCAAAGGAGACTAATGAACTTCAAGCAGAACGCTGCTCCATTGGTTAAATACTTCCAGGAAAAGGGGCTCATCATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017411-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.132 C2=0.312
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.4=100)
A:
PF0040617=ADK=FE(23.4=100)
C2:
PF0040617=ADK=PD(38.0=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGTACCAGCAGCAATAGG
R:
TGAGCCCCTTTTCCTGGAAGT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]