RnoEX6011977 @ rn6
Exon Skipping
Gene
ENSRNOG00000046947 | Ak5
Description
adenylate kinase 5 [Source:RGD Symbol;Acc:1590818]
Coordinates
chr2:257813534-257849402:-
Coord C1 exon
chr2:257849233-257849402
Coord A exon
chr2:257849034-257849147
Coord C2 exon
chr2:257813534-257813725
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTTTTGTATTAAAGGAG
3' ss Score
6.56
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGTCCAGGAAGTGGAAAGGGGACTCAGAGTTTGAAGATCGCAGAGCGGTATGGATTCCAGTGCATTTCAGTGGGAGAATTACTGAGGAAGAAAATCCACAGTGCCAGCAGCAACAGAAAATGGAGCCTGATCGCTAAGATTATCACCAACGGGGAGCTGGCCCCACAG
Seq A exon
GAGACGACAATCACGGAGATAAAACAAAAACTGATGCAAATACCTGATGAGGAAGGCATTGTTATTGATGGATTCCCAAGAGATGTTGCCCAGGCTCTGTCTTTTGAGGACCAG
Seq C2 exon
ATCTGCACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGATTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCGGATGACAACCTGAAAGCCACCCAAAGGAGACTAGTGAACTTCAAGCAGAACGCCGCGCCGCTAGTGAAGTACTTCCAGGAGAAGGGGCTCATCGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046947-'5-12,'5-6,6-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.079 C2=0.312
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.4=100)
A:
PF0040617=ADK=FE(23.4=100)
C2:
PF0040617=ADK=PD(38.0=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCGGTATGGATTCCAG
R:
TTGGGTGGCTTTCAGGTTGTC
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]