HsaEX6031692 @ hg19
Exon Skipping
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:365]
Coordinates
chr1:77763244-77806253:+
Coord C1 exon
chr1:77763244-77763413
Coord A exon
chr1:77763519-77763632
Coord C2 exon
chr1:77806062-77806253
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTGTTTATAAAAGGAA
3' ss Score
5.95
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGTCCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGCAGAACGATATGGATTCCAATACATTTCTGTGGGAGAATTATTAAGAAAGAAGATCCACAGTACCAGCAGCAATAGGAAATGGAGTCTTATTGCCAAGATAATTACAACTGGAGAATTGGCCCCACAG
Seq A exon
GAAACAACAATTACAGAGATAAAGCAAAAATTGATGCAAATACCTGATGAAGAGGGCATTGTTATTGATGGATTTCCAAGAGATGTTGCCCAGGCTCTATCTTTTGAGGACCAA
Seq C2 exon
ATCTGTACCCCCGATTTGGTGGTATTCCTGGCTTGTGCTAATCAGAGACTCAAAGAAAGATTACTGAAGCGTGCAGAACAGCAGGGCCGACCAGACGACAATGTAAAAGCTACCCAAAGGAGACTAATGAACTTCAAGCAGAATGCTGCTCCATTGGTTAAATACTTCCAGGAAAAGGGGCTCATCATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.096 C2=0.305
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.4=100)
A:
PF0040617=ADK=FE(23.4=100)
C2:
PF0040617=ADK=PD(38.0=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGTACCAGCAGCAATAGG
R:
TGAGCCCCTTTTCCTGGAAGT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)